Association mapping of resistance to rust disease in poplar
Identifieur interne : 000254 ( France/Analysis ); précédent : 000253; suivant : 000255Association mapping of resistance to rust disease in poplar
Auteurs : Patricia Faivre-Rampant [France] ; Alois Bresson [France] ; Nathalie Boudet [France] ; Louisa Bataille [France] ; Abdelhafid Bendahmane [France] ; Paul Chalhoub [France] ; Véronique Jorge [France] ; Arnaud Dowkiw [France] ; Vanina Guérin [France] ; Jean-Philippe Masle [France] ; Marc Villar [France] ; Catherine Bastien [France]Source :
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Abstract
The foliar rust caused by the fungus Melampsora larici-populina Kleb. is the most devastating disease affecting the European poplar plantations. We have identified a factor of quantitative resistance, Rus, inherited from the genotype Populus trichocarpa 101-74, which can reduce by 60% the level of infection in laboratory and which has a significant effect in field. This factor is localized on the genetic map of P. trichocarpa 101-74 based on the analysis of one F1 interspecific family P. deltoïdes x P. trichocarpa. Map based cloning of Rus is under development, fine mapping and construction of BAC contig are underway. The alignments with the sequence of P. trichocarpa Nisqually-1 makes it possible to target the area of interest. We defined an exploratory zone of approximately 400 kb on which we already detected 28 genes. Ten of them are re-annotated as Resistance Gene Analogs (RGAs). Predicted genes have been investigated as candidate genes for fine mapping and association study. Association between Rus and those candidate genes has been first investigated in a collection of 94 individuals of P. trichocarpa. The collection was phenotyped for rust resistance under control conditions and in the field. The individuals have been genotyped by EcoTILLING.
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Hal:hal-02758391Le document en format XML
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<ref type="url">http://www.inra.fr</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
</affiliation>
</author>
<author><name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name>
<affiliation wicri:level="1"><hal:affiliation type="laboratory" xml:id="struct-37726" status="OLD"> <orgName>Unité de recherche Amélioration, Génétique et Physiologie Forestières</orgName>
<orgName type="acronym">URAGPF</orgName>
<date type="end">2019-12-31</date>
<desc> <address> <addrLine>2163 Avenue de la Pomme de Pin, CS4001 - Ardon, 45075 Orléans Cedex 2</addrLine>
<country key="FR"></country>
</address>
</desc>
<listRelation> <relation name="UR0588" active="#struct-92114" type="direct"></relation>
</listRelation>
<tutelles><tutelle name="UR0588" active="#struct-92114" type="direct"><org type="institution" xml:id="struct-92114" status="OLD"> <orgName>Institut National de la Recherche Agronomique</orgName>
<orgName type="acronym">INRA</orgName>
<date type="start">1946-05-18</date>
<date type="end">2019-12-31</date>
<desc> <address> <country key="FR"></country>
</address>
<ref type="url">http://www.inra.fr</ref>
</desc>
</org>
</tutelle>
</tutelles>
</hal:affiliation>
<country>France</country>
</affiliation>
</author>
</analytic>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="mix" xml:lang="en"><term>DISEASE RESISTANCE</term>
<term>FOLIAR RUST</term>
<term>GENETIC MAP</term>
</keywords>
<keywords scheme="mix" xml:lang="fr"><term>MELAMPSORA LARICI-POPULINA</term>
<term>PEUPLIER</term>
<term>QUANTITATIVE RESISTANCE</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"> <p>The foliar rust caused by the fungus Melampsora larici-populina Kleb. is the most devastating disease affecting the European poplar plantations. We have identified a factor of quantitative resistance, Rus, inherited from the genotype Populus trichocarpa 101-74, which can reduce by 60% the level of infection in laboratory and which has a significant effect in field. This factor is localized on the genetic map of P. trichocarpa 101-74 based on the analysis of one F1 interspecific family P. deltoïdes x P. trichocarpa. Map based cloning of Rus is under development, fine mapping and construction of BAC contig are underway. The alignments with the sequence of P. trichocarpa Nisqually-1 makes it possible to target the area of interest. We defined an exploratory zone of approximately 400 kb on which we already detected 28 genes. Ten of them are re-annotated as Resistance Gene Analogs (RGAs). Predicted genes have been investigated as candidate genes for fine mapping and association study. Association between Rus and those candidate genes has been first investigated in a collection of 94 individuals of P. trichocarpa. The collection was phenotyped for rust resistance under control conditions and in the field. The individuals have been genotyped by EcoTILLING.</p>
</div>
</front>
</TEI>
<affiliations><list><country><li>France</li>
</country>
</list>
<tree><country name="France"><noRegion><name sortKey="Faivre Rampant, Patricia" sort="Faivre Rampant, Patricia" uniqKey="Faivre Rampant P" first="Patricia" last="Faivre-Rampant">Patricia Faivre-Rampant</name>
</noRegion>
<name sortKey="Bastien, Catherine" sort="Bastien, Catherine" uniqKey="Bastien C" first="Catherine" last="Bastien">Catherine Bastien</name>
<name sortKey="Bataille, Louisa" sort="Bataille, Louisa" uniqKey="Bataille L" first="Louisa" last="Bataille">Louisa Bataille</name>
<name sortKey="Bendahmane, Abdelhafid" sort="Bendahmane, Abdelhafid" uniqKey="Bendahmane A" first="Abdelhafid" last="Bendahmane">Abdelhafid Bendahmane</name>
<name sortKey="Boudet, Nathalie" sort="Boudet, Nathalie" uniqKey="Boudet N" first="Nathalie" last="Boudet">Nathalie Boudet</name>
<name sortKey="Bresson, Alois" sort="Bresson, Alois" uniqKey="Bresson A" first="Alois" last="Bresson">Alois Bresson</name>
<name sortKey="Chalhoub, Paul" sort="Chalhoub, Paul" uniqKey="Chalhoub P" first="Paul" last="Chalhoub">Paul Chalhoub</name>
<name sortKey="Dowkiw, Arnaud" sort="Dowkiw, Arnaud" uniqKey="Dowkiw A" first="Arnaud" last="Dowkiw">Arnaud Dowkiw</name>
<name sortKey="Guerin, Vanina" sort="Guerin, Vanina" uniqKey="Guerin V" first="Vanina" last="Guérin">Vanina Guérin</name>
<name sortKey="Jorge, Veronique" sort="Jorge, Veronique" uniqKey="Jorge V" first="Véronique" last="Jorge">Véronique Jorge</name>
<name sortKey="Masle, Jean Philippe" sort="Masle, Jean Philippe" uniqKey="Masle J" first="Jean-Philippe" last="Masle">Jean-Philippe Masle</name>
<name sortKey="Villar, Marc" sort="Villar, Marc" uniqKey="Villar M" first="Marc" last="Villar">Marc Villar</name>
</country>
</tree>
</affiliations>
</record>
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